YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SECE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANTEAQGS GRGLEAMKWV VVVALLLVAI VGNYLYRDIM LPLRALAVVI LIAAAGGVAL  60
   61 LTTKGKATVA FAREARTEVR KVIWPTRQET LHTTLIVAAV TAVMSLILWG LDGILVRLVS 120
  121 FITGLRF

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	36	0.92
Non-Cytoplasmic	37	42	0.74
Transmembrane Helix	43	63	0.93
Cytoplasmic	64	89	0.83
Transmembrane Helix	90	111	0.91
Non-Cytoplasmic	112	127	0.78