YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AI4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRWLYSTN AKDIAVLYFM LAIFSGMAGT AMSLIIRLEL AAPGSQYLHG NSQLFNVLVV  60
   61 GHAVLMIFFL VMPALIGGFG NYLLPLMIGA TDTAFPRINN IAFWVLPMGL VCLVTSTLVE 120
  121 SGAGTGWTVY PPLSSIQAHS GPSVDLAIFA LHLTSISSLL GAINFIVTTL NMRTNGMTMH 180
  181 KLPLFVWSIF ITAFLLLLSL PVLSAGITML LLDRNFNTSF FEVSGGGDPI LYEHLFWFFG 240
  241 QTVATIIMLM MYNDMHFSKC WKLLKKWITN IMSTLFKALF VKMFMSYNNQ QDKMMNNTML 300
  301 KKDNIKRSSE TTRKMLNNSM NKKFNQWLAG LIDGDGYFGI VSKKYVSLEI TVALEDEMAL 360
  361 KEIQNKFGGS IKLRSGVKAI RYRLTNKTGM IKLINAVNGN IRNTKRLVQF NKVCILLGID 420
  421 FIYPIKLTKD NSWFVGFFDA DGTINYSFKN NHPQLTISVT NKYLQDVQEY KNILGGNIYF 480
  481 DKSQNGYYKW SIQSKDMVLN FINDYIKMNP SRTTKMNKLY LSKEFYNLKE LKAYNKSSDS 540
  541 MQYKAWLNFE NKWKNK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.98
Transmembrane Helix	14	36	0.92
Non-Cytoplasmic	37	58	0.88
Transmembrane Helix	59	84	0.87
Cytoplasmic	85	100	0.89
Transmembrane Helix	101	123	0.89
Non-Cytoplasmic	124	147	0.89
Transmembrane Helix	148	168	0.95
Cytoplasmic	169	183	0.87
Transmembrane Helix	184	210	0.85
Non-Cytoplasmic	211	233	0.91
Transmembrane Helix	234	253	0.93
Cytoplasmic	254	266	0.82
Transmembrane Helix	267	285	0.71
Non-Cytoplasmic	286	556	0.78