YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAPB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIFTLRRIL LLIVTLFLLT FVGFSLSYFT PHAPLQGASL WNAWVFWFNG LIHWDFGVSS  60
   61 INGQPIAEQL KEVFPATMEL CILAFGFALI VGIPVGMIAG ITRHKWQDNL INAIALLGFS 120
  121 IPVFWLALLL TLFCSLTLGW LPVSGRFDLL YEVKPITGFA LIDAWLSDSP WRDEMIMSAI 180
  181 RHMILPVITL SVAPTTEVIR LMRISTIEVY DQNYVKAAAT RGLSRFTILR RHVLHNALPP 240
  241 VIPRLGLQFS TMLTLAMITE MVFSWPGLGR WLINAIRQQD YAAISAGVMV CGSLVIIVNV 300
  301 ISDILGAMAN PLKHKEWYAL R

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	42	0.73
Transmembrane Helix	43	61	0.64
Cytoplasmic	62	79	0.57
Transmembrane Helix	80	101	0.92
Non-Cytoplasmic	102	113	0.61
Transmembrane Helix	114	141	0.79
Cytoplasmic	142	244	0.60
Transmembrane Helix	245	268	0.79
Non-Cytoplasmic	269	280	0.71
Transmembrane Helix	281	305	0.87
Cytoplasmic	306	321	0.72