YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.96
Transmembrane Helix	88	107	0.88
Non-Cytoplasmic	108	116	0.80
Transmembrane Helix	117	135	0.94
Cytoplasmic	136	154	0.85
Transmembrane Helix	155	179	0.82
Non-Cytoplasmic	180	249	0.96
Transmembrane Helix	250	271	0.93
Cytoplasmic	272	279	0.91
Transmembrane Helix	280	302	0.90
Non-Cytoplasmic	303	328	0.91
Transmembrane Helix	329	350	0.91
Cytoplasmic	351	360	0.87
Transmembrane Helix	361	384	0.88
Non-Cytoplasmic	385	418	0.88
Transmembrane Helix	419	443	0.75
Cytoplasmic	444	463	0.92
Transmembrane Helix	464	488	0.91
Non-Cytoplasmic	489	495	0.88
Transmembrane Helix	496	518	0.90
Cytoplasmic	519	534	0.92
Transmembrane Helix	535	559	0.88
Non-Cytoplasmic	560	574	0.89
Transmembrane Helix	575	595	0.96
Cytoplasmic	596	630	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTPLNSQK VLSECKDRED CQENGVLQKG VPTTADRAEP SQISNGYSAV PSTSAGDEAS  60
   61 HSIPAATTTL VAEIRQGERE TWGKKMDFLL SVIGYAVDLG NIWRFPYICY QNGGGAFLLP 120
  121 YTIMAIFGGI PLFYMELALG QYHRNGCISI WRKICPIFKG IGYAICIIAF YIASYYNTII 180
  181 AWALYYLISS LTDRLPWTSC TNSWNTGNCT NYFAQDNITW TLHSTSPAEE FYLRHVLQIH 240
  241 QSKGLQDLGT ISWQLTLCIV LIFTVIYFSI WKGVKTSGKV VWVTATFPYI VLSVLLVRGA 300
  301 TLPGAWRGVV FYLKPNWQKL LETGVWVDAA AQIFFSLGPG FGVLLAFASY NKFNNNCYQD 360
  361 ALVTSVVNCM TSFVSGFVIF TVLGYMAEMR NEDVSEVAKD AGPSLLFITY AEAIANMPAS 420
  421 TFFAIIFFLM LITLGLDSTF AGLEGVITAV LDEFPHIWAK RREWFVLIVV ITCVLGSLLT 480
  481 LTSGGAYVVT LLEEYATGPA VLTVALIEAV AVSWFYGITQ FCSDVKEMLG FSPGWFWRIC 540
  541 WVAISPLFLL FIICSFLMSP PQLRLFQYNY PHWSIVLGYC IGMSSVICIP TYIIYRLIST 600
  601 PGTLKERIIK SITPETPTEI PCGDIRMNAV