YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTN_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIRAPNFGR KLLLTCIVAG VMIAILVSCL QFLVAWHKHE VKYDTLITDV QKYLDTYFAD  60
   61 LKSTTDRLQP LTLDTCQQAN PELTARAAFS MNVRTFVLVK DKKTFCSSAT GEMDIPLNEL 120
  121 IPALDINKNV DMAILPGTPM VPNKPAIVIW YRNPLLKNSG VFAALNLNLT PSLFYSSRQE 180
  181 DYDGVALIIG NTALSTFSSR LMNVNELTDM PVRETKIAGI PLTVRLYADD WTWNDVWYAF 240
  241 LLGGMSGTVV GLLCYYLMSV RMRPGREIMT AIKREQFYVA YQPVVDTQAL RVTGLEVLLR 300
  301 WRHPVAGEIP PDAFINFAES QKMIVPLTQH LFELIARDAA ELEKVLPVGV KFGINIAPDH 360
  361 LHSESFKADI QKLLTSLPAH HFQIVLEITE RDMLKEQEAT QLFAWLHSVG VEIAIDDFGT 420
  421 GHSALIYLER FTLDYLKIDR GFINAIGTET ITSPVLDAVL TLAKRLNMLT VAEGVETPEQ 480
  481 ARWLSERGVN FMQGYWISRP LPLDDFVRWL KKPYTPQW

Type	Start	End	Confidence
Cytoplasmic	1	11	0.52
Transmembrane Helix	12	35	0.66
Non-Cytoplasmic	36	235	0.81
Transmembrane Helix	236	259	0.84
Cytoplasmic	260	518	0.88