YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RODA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.78
Transmembrane Helix	19	40	0.90
Cytoplasmic	41	49	0.74
Transmembrane Helix	50	68	0.91
Non-Cytoplasmic	69	74	0.71
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	135	0.78
Transmembrane Helix	136	156	0.72
Non-Cytoplasmic	157	159	0.56
Transmembrane Helix	160	179	0.72
Cytoplasmic	180	182	0.53
Transmembrane Helix	183	203	0.93
Non-Cytoplasmic	204	271	0.78
Transmembrane Helix	272	294	0.85
Cytoplasmic	295	304	0.83
Transmembrane Helix	305	329	0.81
Non-Cytoplasmic	330	337	0.77
Transmembrane Helix	338	359	0.91
Cytoplasmic	360	370	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNPNKKTF WDKVHLDPTM LLILLALLVY SALVIWSASG QDIGMMERKI GQIAMGLVIM  60
   61 VVMAQIPPRV YEGWAPYLYI ICIILLVAVD AFGAISKGAQ RWLDLGIVRF QPSEIAKIAV 120
  121 PLMVARFINR DVCPPSLKNT GIALVLIFMP TLLVAAQPDL GTSILVALSG LFVLFLSGLS 180
  181 WRLIGVAVVL VAAFIPILWF FLMHDYQRQR VMMLLDPESD PLGAGYHIIQ SKIAIGSGGL 240
  241 RGKGWLHGTQ SQLEFLPERH TDFIFAVLAE ELGLVGILIL LALYILLIMR GLWIAARAQT 300
  301 TFGRVMAGGL MLILFVYVFV NIGMVSGILP VVGVPLPLVS YGGSALIVLM AGFGIVMSIH 360
  361 THRKMLSKSV