YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIR2_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQTSPSKQ VTSGIQNLNM DSPAKKLDFG ATDKENKPFD EDLAKLEAEI DAEHNANKKA  60
   61 AEAKKMAPTL KPEEANEPLL TENPQRFVLF PIKYHEIWQM YKKAEASFWT AEEIDLSKDL 120
  121 HDWNNRLNDD EKFFISHILA FFAASDGIVN ENLVERFSGE VQIPEARCFY GFQIMMENIH 180
  181 SETYSLLIDT YIKEPSQRTY LFNAIDTIPC IRKKADWALR WITDKSSTFA QRLVAFAAVE 240
  241 GIFFSGAFAS IFWLKKRGLM PGLTFSNELI SRDEGLHTDF ACLLFSHLNN RPSKQLIQEI 300
  301 IVDAVRIEQE FLTEALPCAL LGMNADLMKQ YIEFVADRLL VALGNEKIYR STNPFDFMEN 360
  361 ISLGGKTNFF EKRVGDYQKA GVMNSTKKAD ADAEVAKNEN GGDFTFDEDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	232	0.83
Transmembrane Helix	233	254	0.84
Cytoplasmic	255	410	0.74