YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_KLULA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	32	0.79
Non-Cytoplasmic	33	43	0.68
Transmembrane Helix	44	62	0.94
Cytoplasmic	63	97	0.95
Transmembrane Helix	98	120	0.88
Non-Cytoplasmic	121	136	0.82
Transmembrane Helix	137	156	0.90
Cytoplasmic	157	168	0.83
Transmembrane Helix	169	188	0.89
Non-Cytoplasmic	189	207	0.85
Transmembrane Helix	208	230	0.78
Cytoplasmic	231	352	0.86
Transmembrane Helix	353	373	0.92
Non-Cytoplasmic	374	391	0.78
Transmembrane Helix	392	413	0.84
Cytoplasmic	414	421	0.75
Transmembrane Helix	422	442	0.91
Non-Cytoplasmic	443	450	0.69
Transmembrane Helix	451	474	0.68
Cytoplasmic	475	493	0.79
Transmembrane Helix	494	514	0.90
Non-Cytoplasmic	515	521	0.72
Transmembrane Helix	522	539	0.95
Cytoplasmic	540	556	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVKNEHMNK FANGVLFLML GQTLSKGVNF LLNTLLVRYL SPRIFGITSF LEFLLSTVLF  60
   61 FSRESIRIST LRIKSTTDSG KLEKVEDGED TRTLQSLINF GYIPFVIGLP LSIILISWQY 120
  121 SNLNSYFIDL PYFKASIFLI WLSILIELVS EPFYLVHQYL LNHFIRSKYE SLGVTFACVA 180
  181 NFIIVVWFEK MVNGVGLELH DDYKQEGIAI FAFAVGKLVH AMTLLACYSY NYYSEVYTTG 240
  241 ERYSYKLTKI RPETRQESYY FQNDTVQHFK KVYFQLCFKH LLTEGDKLII NSLCTVEEQG 300
  301 IYSLLSNYGS LITRLLFAPI EEALRLFLAR LLSVSSKKNL WLSMKVLIDL TKFYLYLSLF 360
  361 IIIFGPINSS YLLKFVIGSK WSSTSFLETI RTYCFYIPFL SLNGIFEAFF QSVASGDQIF 420
  421 KHSYVMMLFS GIFLFNCWLF IEYFDLSLEG LIVSNILNMA LRIAYCGNFI HKFYHYLLKE 480
  481 SSTETTQSIL PNISTFKNVA LIAAIIGALD WYFIGYVENM RELLINVILA LLLLILVIYK 540
  541 EKSLISELLA AKTYAA