YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PVDB_PLAKN
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKKKRPLF FLLVLLLSHK ANNVLFERMK GILLLECENE YVKNENGYKL ATGHHYMDND  60
   61 QIERWLQGTD RSRRVKIEEN VKYKYNVEEL NTKYEQTKGK RINRILKEST YEAQNVADNN 120
  121 YIDDKANGEY KTDNKTNKGE GARNMVMLDY DISGSGHPDG IIDNVVELGT EDEGNFLENS 180
  181 SKGGDHPYRM NRKERMCSGV INQTFLQKNV MRRCNNKRKR GTRDWDCPTK KDVCIPDRRY 240
  241 QLCMKELTNL VNNTKTHSHN DITFLKLNLK EKLTYDAAVE GDLLLKKYNN VYSEDLCKDI 300
  301 KWSLEDFGDI IMGTDMEGIG YSQVVENNLR TVFGTGTKTQ LDRKKWWNES KKYIWEATIL 360
  361 SVKKKLNGYS AWNCKEDVQI NVEPQIYRWI REWGMDYMSE LPKEQRKIKE KCDRKLYYTN 420
  421 LRICTMSPCN DSCKLYDQWI TRKKKQWDVL STKFSSVKKG QIIETENITT AYDILKQELN 480
  481 GFNEVMFENE INKRDNVYID ICLCAADEPN KNTQEHLKKL KSAPKLETQR SHSTIQPMSS 540
  541 SGAEKVQGDL AHGNINDAAY KSTTDEAAKG DGQNGNQTVA ESNIKGTDNI ENEAAKNVDT 600
  601 YKFVTERSAD TRGATDITET GEEKLNTSYS GSSEITVKEN IPGDGIVKDV SAAVENSENP 660
  661 LETKHKIFEP SKDNSDNSEN SGSMEFKATS SNPITEAVES SSAEGQVQED SAHRSVNTGR 720
  721 DNSTISAATS DDGLSSGDKR VESLTSIENA DDGGDPVQGS LWNLLNDPSV GAGGGKSHIK 780
  781 TEENEGSQAE IDGKNVDIAE QRTATITEVQ PERPDLSDTD NGNVPRSGNK QNEGATALSG 840
  841 AESLESNESV HKTIDNTTHG LENKNGGNEK DFQKHDFMNN DMLNDQTSSD QTSSDQTSSN 900
  901 QTSSDQTSSN QTSSDQTSSD QISSDQTSSD QTSSNQTSSD QTIDTEEHHR DNVRNPEIKS 960
  961 SEDMSKGDFM RNSNSNELYS HNNLNNRKLN IDQYEHRDVK ATREKIILMS EVNKCNNRAS1020
 1021 LKYCNTIEDR MLSSTCSRER SKNLCCSISD FCLNYFELYP YEFYNCMKKE FEDSSYECFT1080
 1081 KGSSTGIGIV YFATGGAFLI ILLLFVSKNV ASNDYEEEAT FDEFVEYSDD IHRTPLMPNH1140
 1141 IEHMQQFTPL DYS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle