YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTYC_ECOLI, PTMC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKSARAKV QAFGGFLTAM VIPNIGAFIA WGFITALFIP TGWLPNEHFA KIVGPMITYL  60
   61 LPVMIGSTGG HLVGGKRGAV MGGIGTIGVI VGAEIPMFLG SMIMGPLGGL VIKYVDKALE 120
  121 KRIPAGFEMV INNFSLGIAG MLLCLLGFEV IGPAVLIANT FVKECIEALV HAGYLPLLSV 180
  181 INEPAKVLFL NNAIDQGVYY PLGMQQASVN GKSIFFMVAS NPGPGLGLLL AFTLFGKGMS 240
  241 KRSAPGAMII HFLGGIHELY FPYVLMKPLT IIAMIAGGMS GTWMFNLLDG GLVAGPSPGS 300
  301 IFAYLALTPK GSFLATIAGV TVGTLVSFAI TSLILKMEKT VETESEDEFA QSANAVKAMK 360
  361 QEGAFSLSRV KRIAFVCDAG MGSSAMGATT FRKRLEKAGL AIEVKHYAIE NVPADADIVV 420
  421 THASLEGRVK RVTDKPLILI NNYIGDPKLD TLFNQLTAEH KH

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	51	0.74
Transmembrane Helix	52	73	0.87
Cytoplasmic	74	79	0.75
Transmembrane Helix	80	103	0.84
Non-Cytoplasmic	104	135	0.85
Transmembrane Helix	136	158	0.89
Cytoplasmic	159	213	0.61
Transmembrane Helix	214	236	0.90
Non-Cytoplasmic	237	243	0.49
Transmembrane Helix	244	264	0.63
Cytoplasmic	265	268	0.47
Transmembrane Helix	269	293	0.68
Non-Cytoplasmic	294	312	0.57
Transmembrane Helix	313	335	0.89
Cytoplasmic	336	462	0.79