YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTFC2_ECOLI, PTW...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.83
Transmembrane Helix	21	41	0.93
Cytoplasmic	42	56	0.80
Transmembrane Helix	57	78	0.89
Non-Cytoplasmic	79	98	0.78
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	131	0.81
Transmembrane Helix	132	154	0.91
Non-Cytoplasmic	155	171	0.85
Transmembrane Helix	172	193	0.87
Cytoplasmic	194	201	0.71
Transmembrane Helix	202	230	0.78
Non-Cytoplasmic	231	250	0.78
Transmembrane Helix	251	270	0.85
Cytoplasmic	271	278	0.75
Transmembrane Helix	279	300	0.88
Non-Cytoplasmic	301	313	0.79
Transmembrane Helix	314	334	0.94
Cytoplasmic	335	359	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELVQILKN TRQHLMTGVS HMIPFVVSGG ILLAVSVMLY GKGAVPDAVA DPNLKKLFDI  60
   61 GVAGLTLMVP FLAAYIGYSI AERSALAPCA IGAWVGNSFG AGFFGALIAG IIGGIVVHYL 120
  121 KKIPVHKVLR SVMPIFIIPI VGTLITAGIM MWGLGEPVGA LTNSLTQWLQ GMQQGSIVML 180
  181 AVIMGLMLAF DMGGPVNKVA YAFMLICVAQ GVYTVVAIAA VGICIPPLGM GLATLIGRKN 240
  241 FSAEERETGK AALVMGCVGV TEGAIPFAAA DPLRVIPSIM VGSVCGAVTA ALVGAQCYAG 300
  301 WGGLIVLPVV EGKLGYIAAV AVGAVVTAVC VNVLKSLARK NGSSTDEKED DLDLDFEIN