YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTTBC_ECOLI, PTT...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.99
Transmembrane Helix	107	131	0.90
Non-Cytoplasmic	132	158	0.90
Transmembrane Helix	159	179	0.91
Cytoplasmic	180	187	0.75
Transmembrane Helix	188	208	0.92
Non-Cytoplasmic	209	226	0.90
Transmembrane Helix	227	245	0.93
Cytoplasmic	246	255	0.82
Transmembrane Helix	256	278	0.94
Non-Cytoplasmic	279	298	0.85
Transmembrane Helix	299	321	0.85
Cytoplasmic	322	340	0.78
Transmembrane Helix	341	361	0.88
Non-Cytoplasmic	362	370	0.74
Transmembrane Helix	371	391	0.79
Cytoplasmic	392	399	0.78
Transmembrane Helix	400	423	0.85
Non-Cytoplasmic	424	438	0.81
Transmembrane Helix	439	461	0.91
Cytoplasmic	462	473	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSKINQTDI DRLIELVGGR GNIATVSHCI TRLRFVLNQP ANARPKEIEQ LPMVKGCFTN  60
   61 AGQFQVVIGT NVGDYYQALI ASTGQAQVDK EQVKKAARHN MKWHEQLISH FAVIFFPLLP 120
  121 ALISGGLILG FRNVIGDLPM SNGQTLAQMY PSLQTIYDFL WLIGEAIFFY LPVGICWSAV 180
  181 KKMGGTPILG IVLGVTLVSP QLMNAYLLGQ QLPEVWDFGM FSIAKVGYQA QVIPALLAGL 240
  241 ALGVIETRLK RIVPDYLYLV VVPVCSLILA VFLAHALIGP FGRMIGDGVA FAVRHLMTGS 300
  301 FAPIGAALFG FLYAPLVITG VHQTTLAIDL QMIQSMGGTP VWPLIALSNI AQGSAVIGII 360
  361 ISSRKHNERE ISVPAAISAW LGVTEPAMYG INLKYRFPML CAMIGSGLAG LLCGLNGVMA 420
  421 NGIGVGGLPG ILSIQPSYWQ VFALAMAIAI IIPIVLTSFI YQRKYRLGTL DIV