YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTND_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEMVDTTQT TTEKKLTQSD IRGVFLRSNL FQGSWNFERM QALGFCFSMV PAIRRLYPEN  60
   61 NEARKQAIRR HLEFFNTQPF VAAPILGVTL ALEEQRANGA EIDDGAINGI KVGLMGPLAG 120
  121 VGDPIFWGTV RPVFAALGAG IAMSGSLLGP LLFFILFNLV RLATRYYGVA YGYSKGIDIV 180
  181 KDMGGGFLQK LTEGASILGL FVMGALVNKW THVNIPLVVS RITDQTGKEH VTTVQTILDQ 240
  241 LMPGLVPLLL TFACMWLLRK KVNPLWIIVG FFVIGIAGYA CGLLGL

Type	Start	End	Confidence
Cytoplasmic	1	73	0.72
Transmembrane Helix	74	92	0.61
Non-Cytoplasmic	93	133	0.64
Transmembrane Helix	134	157	0.91
Cytoplasmic	158	190	0.78
Transmembrane Helix	191	210	0.74
Non-Cytoplasmic	211	236	0.74
Transmembrane Helix	237	258	0.74
Cytoplasmic	259	264	0.77
Transmembrane Helix	265	284	0.95
Non-Cytoplasmic	285	286	0.81