YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTNC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITTLQIVL VFIVACIAGM GSILDEFQFH RPLIACTLVG IVLGDMKTGI IIGGTLEMIA  60
   61 LGWMNIGAAV APDAALASII STILVIAGHQ SIGAGIALAI PLAAAGQVLT IIVRTITVAF 120
  121 QHAADKAADN GNLTAISWIH VSSLFLQAMR VAIPAVIVAL SVGTSEVQNM LNAIPEVVTN 180
  181 GLNIAGGMIV VVGYAMVINM MRAGYLMPFF YLGFVTAAFT NFNLVALGVI GTVMAVLYIQ 240
  241 LSPKYNRVAG APAQAAGNND LDNELD

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.38
Transmembrane Helix	5	24	0.90
Cytoplasmic	25	32	0.33
Transmembrane Helix	33	56	0.73
Non-Cytoplasmic	57	60	0.33
Transmembrane Helix	61	88	0.76
Cytoplasmic	89	91	0.36
Transmembrane Helix	92	118	0.77
Non-Cytoplasmic	119	137	0.47
Transmembrane Helix	138	164	0.71
Cytoplasmic	165	176	0.48
Transmembrane Helix	177	198	0.87
Non-Cytoplasmic	199	209	0.45
Transmembrane Helix	210	239	0.78
Cytoplasmic	240	266	0.56