YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTXC_ECOLI, PTIC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	32	0.93
Non-Cytoplasmic	33	60	0.89
Transmembrane Helix	61	80	0.87
Cytoplasmic	81	87	0.81
Transmembrane Helix	88	109	0.85
Non-Cytoplasmic	110	132	0.86
Transmembrane Helix	133	154	0.87
Cytoplasmic	155	165	0.79
Transmembrane Helix	166	192	0.81
Non-Cytoplasmic	193	204	0.80
Transmembrane Helix	205	222	0.93
Cytoplasmic	223	233	0.74
Transmembrane Helix	234	255	0.90
Non-Cytoplasmic	256	276	0.95
Transmembrane Helix	277	299	0.87
Cytoplasmic	300	306	0.84
Transmembrane Helix	307	327	0.88
Non-Cytoplasmic	328	337	0.68
Transmembrane Helix	338	360	0.87
Cytoplasmic	361	368	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQIQRFGG AMFTPVLLFP FAGIVVGLAI LLQNPMFVGE SLTDPNSLFA QIVHIIEEGG  60
   61 WTVFRNMPLI FAVGLPIGLA KQAQGRACLA VMVSFLTWNY FINAMGMTWG SYFGVDFTQD 120
  121 AVAGSGLTMM AGIKTLDTSI IGAIIISGIV TALHNRLFDK KLPVFLGIFQ GTSYVVIIAF 180
  181 LVMIPCAWLT LLGWPKVQMG IESLQAFLRS AGALGVWVYT FLERILIPTG LHHFIYGQFI 240
  241 FGPAAVEGGI QMYWAQHLQE FSLSAEPLKS LFPEGGFALH GNSKIFGAVG ISLAMYFTAA 300
  301 PENRVKVAGL LIPATLTAML VGITEPLEFT FLFISPLLFA VHAVLAASMS TVMYLFGVVG 360
  361 NMGGGLID