YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTGB_ECOLI, PTGC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	39	0.85
Non-Cytoplasmic	40	50	0.74
Transmembrane Helix	51	72	0.89
Cytoplasmic	73	79	0.77
Transmembrane Helix	80	102	0.89
Non-Cytoplasmic	103	112	0.79
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	151	0.87
Transmembrane Helix	152	173	0.93
Non-Cytoplasmic	174	191	0.76
Transmembrane Helix	192	214	0.63
Cytoplasmic	215	252	0.70
Transmembrane Helix	253	272	0.75
Non-Cytoplasmic	273	277	0.55
Transmembrane Helix	278	297	0.85
Cytoplasmic	298	307	0.48
Transmembrane Helix	308	331	0.88
Non-Cytoplasmic	332	353	0.61
Transmembrane Helix	354	376	0.84
Cytoplasmic	377	477	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNAFANLQ KVGKSLMLPV SVLPIAGILL GVGSANFSWL PAVVSHVMAE AGGSVFANMP  60
   61 LIFAIGVALG FTNNDGVSAL AAVVAYGIMV KTMAVVAPLV LHLPAEEIAS KHLADTGVLG 120
  121 GIISGAIAAY MFNRFYRIKL PEYLGFFAGK RFVPIISGLA AIFTGVVLSF IWPPIGSAIQ 180
  181 TFSQWAAYQN PVVAFGIYGF IERCLVPFGL HHIWNVPFQM QIGEYTNAAG QVFHGDIPRY 240
  241 MAGDPTAGKL SGGFLFKMYG LPAAAIAIWH SAKPENRAKV GGIMISAALT SFLTGITEPI 300
  301 EFSFMFVAPI LYIIHAILAG LAFPICILLG MRDGTSFSHG LIDFIVLSGN SSKLWLFPIV 360
  361 GIGYAIVYYT IFRVLIKALD LKTPGREDAT EDAKATGTSE MAPALVAAFG GKENITNLDA 420
  421 CITRLRVSVA DVSKVDQAGL KKLGAAGVVV AGSGVQAIFG TKSDNLKTEM DEYIRNH