YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTCC_ECOLI, PTQC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	55	0.84
Non-Cytoplasmic	56	85	0.91
Transmembrane Helix	86	106	0.92
Cytoplasmic	107	113	0.86
Transmembrane Helix	114	134	0.92
Non-Cytoplasmic	135	143	0.80
Transmembrane Helix	144	167	0.89
Cytoplasmic	168	186	0.91
Transmembrane Helix	187	207	0.95
Non-Cytoplasmic	208	225	0.72
Transmembrane Helix	226	241	0.74
Cytoplasmic	242	242	0.35
Transmembrane Helix	243	268	0.61
Non-Cytoplasmic	269	299	0.50
Transmembrane Helix	300	321	0.93
Cytoplasmic	322	345	0.55
Transmembrane Helix	346	380	0.71
Non-Cytoplasmic	381	404	0.55
Transmembrane Helix	405	427	0.86
Cytoplasmic	428	452	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVIASLEK VLLPFAVKIG KQPHVNAIKN GFIRLMPLTL AGAMFVLINN VFLSFGEGSF  60
   61 FYSLGIRLDA STIETLNGLK GIGGNVYNGT LGIMSLMAPF FIGMALAEER KVDALAAGLL 120
  121 SVAAFMTVTP YSVGEAYAVG ANWLGGANII SGIIIGLVVA EMFTFIVRRN WVIKLPDSVP 180
  181 ASVSRSFSAL IPGFIILSVM GIIAWALNTW GTNFHQIIMD TISTPLASLG SVVGWAYVIF 240
  241 VPLLWFFGIH GALALTALDN GIMTPWALEN IATYQQYGSV EAALAAGKTF HIWAKPMLDS 300
  301 FIFLGGSGAT LGLILAIFIA SRRADYRQVA KLALPSGIFQ INEPILFGLP IIMNPVMFIP 360
  361 FVLVQPILAA ITLAAYYMGI IPPVTNIAPW TMPTGLGAFF NTNGSVAALL VALFNLGIAT 420
  421 LIYLPFVVVA NKAQNAIDKE ESEEDIANAL KF