YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTC1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.60
Transmembrane Helix	85	105	0.57
Non-Cytoplasmic	106	424	0.95
Transmembrane Helix	425	443	0.92
Cytoplasmic	444	451	0.81
Transmembrane Helix	452	476	0.89
Non-Cytoplasmic	477	484	0.72
Transmembrane Helix	485	505	0.89
Cytoplasmic	506	525	0.91
Transmembrane Helix	526	548	0.89
Non-Cytoplasmic	549	555	0.75
Transmembrane Helix	556	579	0.89
Cytoplasmic	580	1014	0.81
Transmembrane Helix	1015	1037	0.93
Non-Cytoplasmic	1038	1042	0.65
Transmembrane Helix	1043	1065	0.88
Cytoplasmic	1066	1071	0.63
Transmembrane Helix	1072	1094	0.90
Non-Cytoplasmic	1095	1109	0.67
Transmembrane Helix	1110	1131	0.89
Cytoplasmic	1132	1139	0.62
Transmembrane Helix	1140	1163	0.89
Non-Cytoplasmic	1164	1220	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDPRDPGP AGGVFGDLPP SYTRSPPPVN SDLLRRPSYC HAAFALKQIS KGKAVGQKAP  60
   61 LWIRARFQAF LFSLGCHIQR HCGKVLFIGL LVFGALSVGL RVAAIETDIE KLWVEAGSRV 120
  121 SKELRYTKEK QGEESVFTSQ MLIQTPKQEG TNILTQEALL LHLEAALSAS KVQVSLYGKS 180
  181 WDLNKICFKS GVPIIENVMI ERMIDKLFPC MIVTPLDCFW EGSKLQGGSA YLPGMPDIQW 240
  241 MNLDPLKLME ELSQFTSLEG FREMLDKAQV GHAYMNRPCL DPSDTDCPHS APNKDPWQVP 300
  301 NIAAELQGGC HGFSKKFMHW QEELILGERV KDSQNALQSA EALQTMFLLM SPKQLYEHFK 360
  361 DDYEIHDINW NEDKATAILE SWQRKFVEVV HGSIPQNSSS NVYAFSTTTL NDIMKSFSDV 420
  421 SVIRVAGGYL LMLAYACVTM LRWDCAKSQG AVGLAGVLLV ALSVAAGLGL CSLLGLSFNA 480
  481 ATTQVLPSLA LGIGVDDMFL LGHSFTETRS NIPFKERTGD CLRRTGTSVA LTSVNNMIAF 540
  541 FMAALVPIPA LRAFSLQAAV VVVFNFAMAL LIFPAILSLD LHRREDKRLD ILCCFYSPCS 600
  601 SRVIQIQPQE LSDANDNHQR APATPTYTGS TITTSTHITT TVQAFTQCDA AGQHIVTILP 660
  661 PTSQISTTPP SMVLSTPTPT TDPYGSQVFT TSSSTRDLLA QVEEPKEGRE CVPLPFFRWN 720
  721 LSSFAREKYA PLLLKPETKT VVVVVFVALL SLSLYGTTMV HDGLYLTDIV PRDTQEYEFI 780
  781 TAQFKYFSFY NMYLVTMDGF DYARSQRQLL QLHNAFNSVK YVVKDGNHKL PRMWLHYFQD 840
  841 WLKGLQATFD ADWEAGKITY DSYRNGTEDG ALAYKPLIQT GSKKEPFNYS QLTSRRLVDG 900
  901 DGLIPPEVFY IYLTVWVSND PLGYAASQAN FYPHPREWIH DKYDTTGENL RIPAAEPLEF 960
  961 AQFPFYLNGL RQASDFIEAI ESVRTICEEF MRQGIKNYPN GYPFLFWEQY IGLRHWFLLS1020
 1021 ISVVLACTFL VCAILLLNPW TAGVIVFILP MMTVELFGIM GLIGIKLSAI PVVILIASVG1080
 1081 IGVEFTVHIA LGFLTAIGDR NTRSAVAMEH MFAPVIDGAI STLLGVLMLA GSEFDFIMRY1140
 1141 FFAVLAILTL LGILNGLVLL PVLLSLMGPP AEVVPANNAN HLQSPSPEPM PPPMNHHGYY1200
 1201 AGHIPKASHQ AFSETSDSEY