YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PQIA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEHHHAAKH ILCSQCDMLV ALPRLEHGQK AACPRCGTTL TVAWDAPRQR PTAYALAALF  60
   61 MLLLSNLFPF VNMNVAGVTS EITLLEIPGV LFSEDYASLG TFFLLFVQLV PAFCLITILL 120
  121 LVNRAELPVR LKEQLARVLF QLKTWGMAEI FLAGVLVSFV KLMAYGSIGV GSSFLPWCLF 180
  181 CVLQLRAFQC VDRRWLWDDI APMPELRQPL KPGVTGIRQG LRSCSCCTAI LPADEPVCPR 240
  241 CSTKGYVRRR NSLQWTLALL VTSIMLYLPA NILPIMVTDL LGSKMPSTIL AGVILLWSEG 300
  301 SYPVAAVIFL ASIMVPTLKM IAIAWLCWDA KGHGKRDSER MHLIYEVVEF VGRWSMIDVF 360
  361 VIAVLSALVR MGGLMSIYPA MGALMFALVV IMTMFSAMTF DPRLSWDRQP ESEHEES

Type	Start	End	Confidence
Cytoplasmic	1	52	0.98
Transmembrane Helix	53	71	0.92
Non-Cytoplasmic	72	98	0.87
Transmembrane Helix	99	122	0.91
Cytoplasmic	123	141	0.87
Transmembrane Helix	142	160	0.93
Non-Cytoplasmic	161	167	0.59
Transmembrane Helix	168	188	0.89
Cytoplasmic	189	254	0.97
Transmembrane Helix	255	277	0.87
Non-Cytoplasmic	278	303	0.89
Transmembrane Helix	304	328	0.86
Cytoplasmic	329	349	0.92
Transmembrane Helix	350	369	0.94
Non-Cytoplasmic	370	376	0.72
Transmembrane Helix	377	400	0.88
Cytoplasmic	401	417	0.96