YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32563594, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMADEELGDE VKVFRRDEDA DDDPMISGET SEQQLADDKK EAVMEAELDG AGRNPSIDVL  60
   61 KSAFPKVEPM SPSFPGLMSH FSPGYSAAAL PMFMPLFMNP YAAALRSPSL MFPMGAMSPT 120
  121 FPMFPPSPVY GAAIAAAAAK QHFENMAPLN MRAGHPMNQM GMPPYMHPSS MAPQNVDRRA 180
  181 QGGGKAKKDD HVKKPLNAFV WFMKENRKAL LEEIGNNEKQ SAELNKELGK RWHDLSKEEQ 240
  241 AKYFEMAKKD KETHKERYPE WSARENYAVN KKKTKKRRDK SIPSENNDQK KCRARFGVNN 300
  301 TEMWCKFCKR KKKCEYATDR SGGSDITDSQ DGRGTSGAYS SSSESPSPKA NAGIALTTQQ 360
  361 QQAAMMHTML MQMRLGSTTG ASTHVPSPLA SSSAGRSPLD ANASDSESDV EEEEDEQIDP 420
  421 TVMQQTHDML MQESMCTI

Type	Start	End	Confidence
Cytoplasmic	1	80	0.66
Transmembrane Helix	81	103	0.67
Non-Cytoplasmic	104	438	0.53