YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNTB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	32	0.89
Transmembrane Helix	33	51	0.94
Non-Cytoplasmic	52	56	0.85
Transmembrane Helix	57	75	0.95
Cytoplasmic	76	86	0.88
Transmembrane Helix	87	107	0.95
Non-Cytoplasmic	108	124	0.85
Transmembrane Helix	125	147	0.89
Cytoplasmic	148	162	0.88
Transmembrane Helix	163	179	0.96
Non-Cytoplasmic	180	185	0.73
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	215	0.78
Transmembrane Helix	216	234	0.92
Non-Cytoplasmic	235	239	0.75
Transmembrane Helix	240	260	0.91
Cytoplasmic	261	462	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLVTAAY IVAAILFIFS LAGLSKHETS RQGNNFGIAG MAIALIATIF GPDTGNVGWI  60
   61 LLAMVIGGAI GIRLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLHHD AGMAPILVNI 120
  121 HLTEVFLGIF IGAVTFTGSV VAFGKLCGKI SSKPLMLPNR HKMNLAALVV SFLLLIVFVR 180
  181 TDSVGLQVLA LLIMTAIALV FGWHLVASIG GADMPVVVSM LNSYSGWAAA AAGFMLSNDL 240
  241 LIVTGALVGS SGAILSYIMC KAMNRSFISV IAGGFGTDGS STGDDQEVGE HREITAEETA 300
  301 ELLKNSHSVI ITPGYGMAVA QAQYPVAEIT EKLRARGINV RFGIHPVAGR LPGHMNVLLA 360
  361 EAKVPYDIVL EMDEINDDFA DTDTVLVIGA NDTVNPAAQD DPKSPIAGMP VLEVWKAQNV 420
  421 IVFKRSMNTG YAGVQNPLFF KENTHMLFGD AKASVDAILK AL