YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNTA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGIPRERL TNETRVAATP KTVEQLLKLG FTVAVESGAG QLASFDDKAF VQAGAEIVEG  60
   61 NSVWQSEIIL KVNAPLDDEI ALLNPGTTLV SFIWPAQNPE LMQKLAERNV TVMAMDSVPR 120
  121 ISRAQSLDAL SSMANIAGYR AIVEAAHEFG RFFTGQITAA GKVPPAKVMV IGAGVAGLAA 180
  181 IGAANSLGAI VRAFDTRPEV KEQVQSMGAE FLELDFKEEA GSGDGYAKVM SDAFIKAEME 240
  241 LFAAQAKEVD IIVTTALIPG KPAPKLITRE MVDSMKAGSV IVDLAAQNGG NCEYTVPGEI 300
  301 FTTENGVKVI GYTDLPGRLP TQSSQLYGTN LVNLLKLLCK EKDGNITVDF DDVVIRGVTV 360
  361 IRAGEITWPA PPIQVSAQPQ AAQKAAPEVK TEEKCTCSPW RKYALMALAI ILFGWMASVA 420
  421 PKEFLGHFTV FALACVVGYY VVWNVSHALH TPLMSVTNAI SGIIVVGALL QIGQGGWVSF 480
  481 LSFIAVLIAS INIFGGFTVT QRMLKMFRKN

Type	Start	End	Confidence
Cytoplasmic	1	128	0.72
Transmembrane Helix	129	143	0.42
Non-Cytoplasmic	144	167	0.65
Transmembrane Helix	168	191	0.67
Cytoplasmic	192	399	0.98
Transmembrane Helix	400	419	0.89
Non-Cytoplasmic	420	423	0.88
Transmembrane Helix	424	443	0.93
Cytoplasmic	444	452	0.76
Transmembrane Helix	453	472	0.93
Non-Cytoplasmic	473	479	0.72
Transmembrane Helix	480	500	0.94
Cytoplasmic	501	510	0.92