YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PITA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.80
Transmembrane Helix	10	32	0.83
Cytoplasmic	33	51	0.89
Transmembrane Helix	52	77	0.88
Non-Cytoplasmic	78	91	0.88
Transmembrane Helix	92	114	0.88
Cytoplasmic	115	122	0.77
Transmembrane Helix	123	144	0.89
Non-Cytoplasmic	145	154	0.82
Transmembrane Helix	155	177	0.93
Cytoplasmic	178	206	0.95
Transmembrane Helix	207	227	0.94
Non-Cytoplasmic	228	233	0.88
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	380	0.96
Transmembrane Helix	381	400	0.93
Non-Cytoplasmic	401	427	0.87
Transmembrane Helix	428	452	0.65
Cytoplasmic	453	472	0.65
Transmembrane Helix	473	494	0.94
Non-Cytoplasmic	495	499	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFAGLDL HTGLLLLLAL AFVLFYEAIN GFHDTANAVA TVIYTRAMRS QLAVVMAAVF  60
   61 NFLGVLLGGL SVAYAIVHML PTDLLLNMGS SHGLAMVFSM LLAAIIWNLG TWYFGLPASS 120
  121 SHTLIGAIIG IGLTNALMTG TSVVDALNIP KVLSIFGSLI VSPIVGLVFA GGLIFLLRRY 180
  181 WSGTKKRARI HLTPAEREKK DGKKKPPFWT RIALILSAIG VAFSHGANDG QKGIGLVMLV 240
  241 LIGVAPAGFV VNMNATGYEI TRTRDAINNV EAYFEQHPAL LKQATGADQL VPAPEAGATQ 300
  301 PAEFHCHPSN TINALNRLKG MLTTDVESYD KLSLDQRSQM RRIMLCVSDT IDKVVKMPGV 360
  361 SADDQRLLKK LKSDMLSTIE YAPVWIIMAV ALALGIGTMI GWRRVATTIG EKIGKKGMTY 420
  421 AQGMSAQMTA AVSIGLASYT GMPVSTTHVL SSSVAGTMVV DGGGLQRKTV TSILMAWVFT 480
  481 LPAAVLLSGG LYWLSLQFL