YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHO4_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.57
Transmembrane Helix	8	26	0.74
Cytoplasmic	27	41	0.71
Transmembrane Helix	42	64	0.74
Non-Cytoplasmic	65	84	0.89
Transmembrane Helix	85	105	0.93
Cytoplasmic	106	113	0.78
Transmembrane Helix	114	135	0.86
Non-Cytoplasmic	136	148	0.86
Transmembrane Helix	149	171	0.91
Cytoplasmic	172	184	0.79
Transmembrane Helix	185	206	0.93
Non-Cytoplasmic	207	222	0.84
Transmembrane Helix	223	244	0.90
Cytoplasmic	245	421	0.94
Transmembrane Helix	422	437	0.52
Non-Cytoplasmic	438	466	0.53
Transmembrane Helix	467	488	0.92
Cytoplasmic	489	505	0.55
Transmembrane Helix	506	523	0.54
Non-Cytoplasmic	524	529	0.41
Transmembrane Helix	530	550	0.77
Cytoplasmic	551	557	0.55
Transmembrane Helix	558	581	0.91
Non-Cytoplasmic	582	590	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLHQFDYLL AIGTIFAALD AWNIGANDVA NSWATSVAAR SVTYLQAMIL GSIMEFAGSV  60
   61 GVGARVADTI RTKVVDTTLF ADDPALLMLG MVCAVVASSI YLTMATRFGL PVSTTHSIMG 120
  121 GVIGMGIAAV GADGVQWVGS SINDGVVSVF LAWVIAPGLA GAFASIIFLV TKYGVLLRSN 180
  181 PVYKAFVMVP IYFGITAALL CMLLLWKGGS YKVTLTNPEI AGTIIGVGAA WALLVTIFLM 240
  241 PWLYRIVILE DWQLRFWHIP LGPLLLRRGE VPPPPADGSG VVQDFYAGRL TKEQLAARRA 300
  301 AQNGDSEMAA GAVTSSTSNP SAPTDGEKGA TITKDDSSYS HDHSEPAQAA QPQIKTMVGP 360
  361 RPAGPWHSGA VLFWYVKWAL FRGVDQDVLS SQQEKSVISS DVEELHAHAT HYDNKTEYMY 420
  421 SFLQIMTAAA ASFTHGANDI ANAIGPYATV FQLWKDGALP EKGKADVPVW ILVFGASCLV 480
  481 IGLWTYGYNI MRNLGNRITL QSPSRGFSME LGSAVTVILA TRLKLPVSTT QCITGATVGV 540
  541 GLCSGTWRTI NWRLVAWIYM GWFITLPVAG IISGCLMGII INAPRWGYSG