YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHEP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	49	0.89
Non-Cytoplasmic	50	54	0.67
Transmembrane Helix	55	74	0.90
Cytoplasmic	75	93	0.91
Transmembrane Helix	94	117	0.73
Non-Cytoplasmic	118	134	0.71
Transmembrane Helix	135	154	0.95
Cytoplasmic	155	163	0.80
Transmembrane Helix	164	184	0.95
Non-Cytoplasmic	185	207	0.87
Transmembrane Helix	208	230	0.90
Cytoplasmic	231	248	0.94
Transmembrane Helix	249	271	0.91
Non-Cytoplasmic	272	290	0.94
Transmembrane Helix	291	312	0.92
Cytoplasmic	313	339	0.95
Transmembrane Helix	340	361	0.93
Non-Cytoplasmic	362	367	0.79
Transmembrane Helix	368	390	0.91
Cytoplasmic	391	407	0.92
Transmembrane Helix	408	429	0.93
Non-Cytoplasmic	430	435	0.81
Transmembrane Helix	436	455	0.93
Cytoplasmic	456	458	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNASTVSED TASNQEPTLH RGLHNRHIQL IALGGAIGTG LFLGIGPAIQ MAGPAVLLGY  60
   61 GVAGIIAFLI MRQLGEMVVE EPVSGSFAHF AYKYWGPFAG FLSGWNYWVM FVLVGMAELT 120
  121 AAGIYMQYWF PDVPTWIWAA AFFIIINAVN LVNVRLYGET EFWFALIKVL AIIGMIGFGL 180
  181 WLLFSGHGGE KASIDNLWRY GGFFATGWNG LILSLAVIMF SFGGLELIGI TAAEARDPEK 240
  241 SIPKAVNQVV YRILLFYIGS LVVLLALYPW VEVKSNSSPF VMIFHNLDSN VVASALNFVI 300
  301 LVASLSVYNS GVYSNSRMLF GLSVQGNAPK FLTRVSRRGV PINSLMLSGA ITSLVVLINY 360
  361 LLPQKAFGLL MALVVATLLL NWIMICLAHL RFRAAMRRQG RETQFKALLY PFGNYLCIAF 420
  421 LGMILLLMCT MDDMRLSAIL LPVWIVFLFM AFKTLRRK