YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX12_PICPA
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFYSNLDSR SLDSETPTLF EIISAQELEK LLTPSIRYIL VHYTQRYPRY LLKVANHFDE  60
   61 LNLAIRGFIE FRQLSHWNST FIDKFYGLKK VRNHQTISTE RLQSQVPTLL EQRRRLSKTQ 120
  121 IAVSLFEIVG VPYLRDKLDH LYDKLYPKLM MNNLDPKESL KTFVQYYFLK LYPILLSVLT 180
  181 TIQVLLQVLY LSGTFKSPSI IMWLFKMKYA RLNSYDYTLD EQRVNKFLNK TSPGKLGTGN 240
  241 NRIRPITLTE SLYLLYSDLT RPLKKGLLIT GGTLFPASIF LLKFLEWWNS SDFATKMNKP 300
  301 RNPFSDSELP PPINLSKDLL ADRKIKKLLK KSQSNDGTCP LCHKQITNPA VIETGYVFCY 360
  361 TCIFKHLTSS ELDEETGGRC PITGRRLLGC RINKTTGEWT VDGIRRLMM

Type	Start	End	Confidence
Cytoplasmic	1	170	0.50
Transmembrane Helix	171	191	0.54
Non-Cytoplasmic	192	409	0.69