YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38071, gi\|105011
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLLLGLV ALSECIIYKV PLVRKKSLRR NLSEHGLLKD FLKKHNLNPA SKYFPQAEAP  60
   61 TLIDEQPLEN YLDVEYFGTI GIGTPAQNFT VVFDTGSSNL WVPSVYCYSL ACMDHNLFNP 120
  121 QDSSTYRATS KTVSITYGTG SMTGILGYDT VKVGGISDTN QIFGLSETEP GFFLYFAPFD 180
  181 GILGLAYPSI SSSGATPVFD NIWNQRLVSQ DLFSVYLSAD DQSGSVVIFG GIDSSYYTGS 240
  241 LNWVPVSVEG YWQISVDSIT MNGKTIACAK GCQAIVDTGT SLLTGPTSPI ANIQSDIGAS 300
  301 ENSDGEMVVS CSAISSLPDI VFTINGVQYP LPPSAYILQS QGSCTSGFQG MDVPTESGEL 360
  361 WILGDVFIRQ YFTVFDRANN QVGLAPVA

Type	Start	End	Confidence
Signal Peptide	1	15	0.97
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	388	0.99