YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEPA1_RABIT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLLLGLL ALSECIVHKV PLVRKKSLRK NLIEKGLLQD YLKTHTPNLA TKYFPKETFA  60
   61 SVSTESLENY LDAEYFGTIS IGTPPQEFTV IFDTGSSNLW VPSTYCSSLA CFLHKRFNPD 120
  121 DSSTFQATSE TLSITYGTGS MTGILGYDTV KVGNIEDTNQ IFGLSKTEPG ITFLVAPFDG 180
  181 ILGLAYPSIS ASDATPVFDN MWNEGLVSED LFSVYLSSNG EKGSMVMFGG IDSSYYTGSL 240
  241 NWVPVSHEGY WQITMDSITI NGETIACADS CQAVVDTGTS LLAGPTSAIS KIQSYIGASK 300
  301 NLLGENIISC SAIDSLPDIV FTINNVQYPL PASAYILKED DDCLSGFDGM NLDTSYGELW 360
  361 ILGDVFIRQY FTVFDRANNQ VGLAAAA

Type	Start	End	Confidence
Signal Peptide	1	15	0.99
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	387	0.99