YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST48_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRSLVLLEN LNLRDTHSLF FRSLADRGFE LTFRTADDAG LSLIKYGEFL YDNLIIFSPS  60
   61 IEDFGGNINV ETITAFIDGG GSVLVAASSD IGDPLRELGS ECGIEFDEER TAVIDHHNYD 120
  121 ISDPGQHTLI VADAENLLKA PTIVGKKALN PILFRGVGMV ADPDNPLVLD ILTGSSTSYS 180
  181 FFPDKPITQY PHAVGKNTLL IAGLQARNNA RVVFSGSLDF FSDAFFSSAV QKAAPGSKRY 240
  241 SQTGNYELAV ALSRWVFKEE GVLRVGAVSH HRVGELAPPN AYTVTDLVEY SIVIEKLSDG 300
  301 KWIPFDGDDI QLEFVRIDPF VRTFLKRNGG KYSVQFKLPD VYGVFQFKVD YNRLGYTHLY 360
  361 SSTQVSVRPL QHTQYERFIP SAYPYYAGAF SMMVGLFMFS IVFLHMKEKE KSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	381	0.99
Transmembrane Helix	382	404	0.92
Cytoplasmic	405	413	0.90