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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NOTC1_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFLVKLTL LTAASLATVA QGQRCSEYCQ NGGICEYKPS GEASCRCPAD FVGAQCQFPN  60
   61 PCNPSPCRNG GVCRPQMQGN EVGVKCDCVL GFSDRLCLTP VNHACMNSPC RNGGTCSLLT 120
  121 LDTFTCRCQP GWSGKTCQLA DPCASNPCAN GGQCSAFESH YICTCPPNFH GQTCRQDVNE 180
  181 CAVSPSPCRN GGTCINEVGS YLCRCPPEYT GPHCQRLYQP CLPSPCRSGG TCVQTSDTTH 240
  241 TCSCLPGFTG QTCEHNVDDC TQHACENGGP CIDGINTYNC HCDKHWTGQY CTEDVDECEL 300
  301 SPNACQNGGT CHNTIGGFHC VCVNGWTGDD CSENIDDCAS AACSHGATCH DRVASFFCEC 360
  361 PHGRTGLLCH LDDACISNPC QKGSNCDTNP VSGKAICTCP PGYTGSACNQ DIDECSLGAN 420
  421 PCEHGGRCLN TKGSFQCKCL QGYEGPRCEM DVNECKSNPC QNDATCLDQI GGFHCICMPG 480
  481 YEGVFCQINS DDCASQPCLN GKCIDKINSF HCECPKGFSG SLCQVDVDEC ASTPCKNGAK 540
  541 CTDGPNKYTC ECTPGFSGIH CELDINECAS SPCHYGVCRD GVASFTCDCR PGYTGRLCET 600
  601 NINECLSQPC RNGGTCQDRE NAYICTCPKG TTGVNCEINI DDCKRKPCDY GKCIDKINGY 660
  661 ECVCEPGYSG SMCNINIDDC ALNPCHNGGT CIDGVNSFTC LCPDGFRDAT CLSQHNECSS 720
  721 NPCIHGSCLD QINSYRCVCE AGWMGRNCDI NINECLSNPC VNGGTCKDMT SGYLCTCRAG 780
  781 FSGPNCQMNI NECASNPCLN QGSCIDDVAG FKCNCMLPYT GEVCENVLAP CSPRPCKNGG 840
  841 VCRESEDFQS FSCNCPAGWQ GQTCEVDINE CVRNPCTNGG VCENLRGGFQ CRCNPGFTGA 900
  901 LCENDIDDCE PNPCSNGGVC QDRVNGFVCV CLAGFRGERC AEDIDECVSA PCRNGGNCTD 960
  961 CVNSYTCSCP AGFSGINCEI NTPDCTESSC FNGGTCVDGI SSFSCVCLPG FTGNYCQHDV1020
 1021 NECDSRPCQN GGSCQDGYGT YKCTCPHGYT GLNCQSLVRW CDSSPCKNGG SCWQQGASFT1080
 1081 CQCASGWTGI YCDVPSVSCE VAARQQGVSV AVLCRHAGQC VDAGNTHLCR CQAGYTGSYC1140
 1141 QEQVDECQPN PCQNGATCTD YLGGYSCECV PGYHGMNCSK EINECLSQPC QNGGTCIDLV1200
 1201 NTYKCSCPRG TQGVHCEIDI DDCSPSVDPL TGEPRCFNGG RCVDRVGGYG CVCPAGFVGE1260
 1261 RCEGDVNECL SDPCDPSGSY NCVQLINDFR CECRTGYTGK RCETVFNGCK DTPCKNGGTC1320
 1321 AVASNTKHGY ICKCQPGYSG SSCEYDSQSC GSLRCRNGAT CVSGHLSPRC LCAPGFSGHE1380
 1381 CQTRMDSPCL VNPCYNGGTC QPISDAPFYR CSCPANFNGL LCHILDYSFS GGQGRDIAPP1440
 1441 VEVEIRCEIA QCEGRGGNAI CDTQCNNHAC GWDGGDCSLN FDDPWQNCSA ALQCWRYFND1500
 1501 GKCDEQCATA GCLYDGFDCQ RLEGQCNPLY DQYCRDHYAD GHCDQGCNNA ECEWDGLDCA1560
 1561 DDVPQKLAVG SLVLVVHIPP DELRNRSSSF LRELSSLLHT NVVFRRDANG EALIFPYYGS1620
 1621 EHELSKHKRS DWTDPGQLMQ RARRSLTSFL KPRTRRELDH MEVKGSIVYL EIDNRQCFQQ1680
 1681 SDECFQSATD VAAFLGALAS SGNLNVPYII EAVTSEGGPP KTGEMYPMFL VLLALAVLAL1740
 1741 AAVGVVVSRK RKREHGQLWF PEGFKVNEPK KKRREPVGED SVGLKPLKNS DSSLMDEQLS1800
 1801 EWAEDDTNKR FRFEGQSILE MSGQLDHRQW TQQHLDAADL RLNSMAPTPP QGQIENDCMD1860
 1861 VNVRGPDGFT PLMIASCSGG GLENENGEAE EDPSADVITD FIYHGANLHN QTDRTGETAL1920
 1921 HLAARYARSD AAKRLLESCA DANVQDNMGR TPLHAAVAAD AQGVFQILIR NRATDLDARM1980
 1981 HDGTTPLILA TRLAVEGMVE ELINCHADPN AVDDSGKSAL HWAAAVNNVD AAVVLLKNGA2040
 2041 NKDLQNNKEE TPLFLAAREG SYETAKVLLD HLANRDIADH LDQLPRDIAH ERMHHDIVRL2100
 2101 LEEYNLVRSP PLPLSPPLCC PNTYLGIKPS PGNNNNTAKK TRKPGGKGVG GKDSGKDIRT2160
 2161 KKKKSGDGKN GGIMEVGVLS PVDSLESPHG YLSDVSSPPM MTSPFQQSPP ISLNQLQGLA2220
 2221 DSHMGGALQG LGKPFDSAPR LSHLPVANNV GGAQAGACDW LQRVQQQQQQ QQQQQQAGML2280
 2281 MPTMLSATNM PQVMGYPTMQ SSHLGAPSHM IAHQNMAPMQ HQNISHHFLG DLSGLDLQSS2340
 2341 SGHAPIQTIL PQDSQRMAPP ISSTQFLTPP SQHSYSNPMD NTPNHQQVPD HPFLTPSAGS2400
 2401 PDQWSSSSPH SNLSDWSEGI SSPPTSMQMN HIPEAFK

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