YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NFS1_CANMA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKTVLKNSG RIQRNFIFRN VSSTLQRSLA TSASTSSSTT TSNAETGELH VSTPLDSPSV  60
   61 HPPDGSSISL KSATRDASLF GTRPIYLDVQ ATTPVDPRVL DKMLEFYTGL YGNPHSSTHA 120
  121 YGWETDKEVE KARGYIADVI NADPKEIIFT SGATETNNMA IKGVPRFYKK TKKHIITTQT 180
  181 EHKCVLDSAR HMQDEGFDIT YLPVNSEGLI NLDDLKKAIR KDTVLVSVMA VNNEIGVIQP 240
  241 LKEIGQICRE NKIFFHTDAA QAYGKIPIDV NEMNIDLLSI SSHKIYGPKG IGACYVRRRP 300
  301 RVRLDPIITG GGQERGLRSG TLAPPLVAGF GEAARLMKQE SAFDKKHIEK LSTKLKNGLL 360
  361 SIPSTQFNGC NNPTYQYPGC VNVSFAYIEG ESLLMALKDI ALSSGSACTS ASLEPSYVLH 420
  421 ALGADDALAH SSIRFGIGRF TTEAEVDYVI QAINERVDFL RKMSPLWEMV QGGIDLNSIE 480
  481 WSGH

Type	Start	End	Confidence
Signal Peptide	1	44	0.78
N-region	1	35
H-region	36	41
C-region	42	44
Cleavage Site	44	45
Non-Cytoplasmic	45	484	0.99