YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NANT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	51	0.82
Transmembrane Helix	52	72	0.90
Cytoplasmic	73	85	0.79
Transmembrane Helix	86	107	0.90
Non-Cytoplasmic	108	111	0.72
Transmembrane Helix	112	134	0.88
Cytoplasmic	135	144	0.88
Transmembrane Helix	145	164	0.94
Non-Cytoplasmic	165	170	0.74
Transmembrane Helix	171	190	0.93
Cytoplasmic	191	222	0.94
Transmembrane Helix	223	242	0.93
Non-Cytoplasmic	243	247	0.86
Transmembrane Helix	248	267	0.95
Cytoplasmic	268	275	0.80
Transmembrane Helix	276	296	0.91
Non-Cytoplasmic	297	315	0.85
Transmembrane Helix	316	335	0.96
Cytoplasmic	336	343	0.76
Transmembrane Helix	344	367	0.83
Non-Cytoplasmic	368	372	0.56
Transmembrane Helix	373	393	0.77
Cytoplasmic	394	403	0.70
Transmembrane Helix	404	426	0.91
Non-Cytoplasmic	427	432	0.71
Transmembrane Helix	433	453	0.94
Cytoplasmic	454	496	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTTQNIPW YRHLNRAQWR AFSAAWLGYL LDGFDFVLIA LVLTEVQGEF GLTTVQAASL  60
   61 ISAAFISRWF GGLMLGAMGD RYGRRLAMVT SIVLFSAGTL ACGFAPGYIT MFIARLVIGM 120
  121 GMAGEYGSSA TYVIESWPKH LRNKASGFLI SGFSVGAVVA AQVYSLVVPV WGWRALFFIG 180
  181 ILPIIFALWL RKNIPEAEDW KEKHAGKAPV RTMVDILYRG EHRIANIVMT LAAATALWFC 240
  241 FAGNLQNAAI VAVLGLLCAA IFISFMVQSA GKRWPTGVML MVVVLFAFLY SWPIQALLPT 300
  301 YLKTDLAYNP HTVANVLFFS GFGAAVGCCV GGFLGDWLGT RKAYVCSLLA SQLLIIPVFA 360
  361 IGGANVWVLG LLLFFQQMLG QGIAGILPKL IGGYFDTDQR AAGLGFTYNV GALGGALAPI 420
  421 IGALIAQRLD LGTALASLSF SLTFVVILLI GLDMPSRVQR WLRPEALRTH DAIDGKPFSG 480
  481 AVPFGSAKND LVKTKS