YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A2_RABIT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.92
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	106	0.83
Transmembrane Helix	107	128	0.90
Cytoplasmic	129	139	0.58
Transmembrane Helix	140	159	0.74
Non-Cytoplasmic	160	168	0.77
Transmembrane Helix	169	192	0.90
Cytoplasmic	193	203	0.70
Transmembrane Helix	204	226	0.82
Non-Cytoplasmic	227	234	0.78
Transmembrane Helix	235	257	0.77
Cytoplasmic	258	274	0.73
Transmembrane Helix	275	298	0.90
Non-Cytoplasmic	299	318	0.78
Transmembrane Helix	319	343	0.79
Cytoplasmic	344	360	0.82
Transmembrane Helix	361	383	0.86
Non-Cytoplasmic	384	390	0.72
Transmembrane Helix	391	413	0.89
Cytoplasmic	414	429	0.78
Transmembrane Helix	430	453	0.89
Non-Cytoplasmic	454	459	0.73
Transmembrane Helix	460	483	0.90
Cytoplasmic	484	809	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAGTGRSL RTPPPRLLLL LLLQVAGPAG ALAETLLNAP KAMGTSSSPL SPASVVAPGT  60
   61 TAFEESRLPV FTLDYPHVQI PFEITLWILL ASLAKIGFHL YHKLPTIVPE SCLLIMVGLL 120
  121 LGGIIFGVDE KSPPAMKTDV FFLYLLPPIV LDAGYFMPTR PFFENLGTIF WYAVVGTLWN 180
  181 SIGIGVSLFG ICQIEAFGLS DITLLQNLLF GSLISAVDPV AVLAVFENIH VNEQLYILVF 240
  241 GESLLNDAVT VVLYNLFKSF CQMKTIETID VFAGIANFFV VGIGGVLIGI FLGFIAAFTT 300
  301 RFTHNIRVIE PLFVFLYSYL SYITAEMFHL SGIMAITACA MTMNKYVEEN VSQKSYTTIK 360
  361 YFMKMLSSVS ETLIFIFMGV STVGKNHEWN WAFVCFTLAF CLIWRALGVF VLTRVINWFR 420
  421 TIPLTFKDQF IIAYGGLRGA ICFALVFLLP AAVFPRKKLF ITAAIVVIFF TVFILGITIR 480
  481 PLVEFLDVKR SNKKQQAVSE EIHCRFFDHV KTGIEDVCGH WGHNFWRDKF KKFDDKYLRK 540
  541 LLIRENQPKS SIVSLYKKLE IKHAIEMAET GMISTVPSFA SLNDCREEKI RKLTPGEMDE 600
  601 IREILSRNLY QIRQRTLSYN RHNLTADTSE RQAKEILIRR RHSLRESIRK DNSLNRERRA 660
  661 STSTSRYLSL PKNTKLPEKL QKRKNISNAD GDSSDSEADA GTTVLNLQPR ARRFLPEPFS 720
  721 KKASQAYKME WKNEVDAGSG QGQPSPPAAP RSKEGGTQTP AVLRQPLLSK DQGREDSLTE 780
  781 GGRPKPPPRL VRRASEPGNR KSRLGSDKP