YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A1_RABIT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.55
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	104	0.88
Transmembrane Helix	105	122	0.67
Cytoplasmic	123	127	0.50
Transmembrane Helix	128	150	0.79
Non-Cytoplasmic	151	159	0.59
Transmembrane Helix	160	179	0.91
Cytoplasmic	180	187	0.65
Transmembrane Helix	188	211	0.89
Non-Cytoplasmic	212	223	0.66
Transmembrane Helix	224	246	0.83
Cytoplasmic	247	253	0.67
Transmembrane Helix	254	277	0.73
Non-Cytoplasmic	278	290	0.78
Transmembrane Helix	291	315	0.89
Cytoplasmic	316	322	0.70
Transmembrane Helix	323	341	0.77
Non-Cytoplasmic	342	346	0.67
Transmembrane Helix	347	367	0.89
Cytoplasmic	368	384	0.86
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	412	0.73
Transmembrane Helix	413	436	0.91
Cytoplasmic	437	449	0.91
Transmembrane Helix	450	469	0.83
Non-Cytoplasmic	470	478	0.69
Transmembrane Helix	479	499	0.90
Cytoplasmic	500	816	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLWSAVRGL SPPRIVPSLL VVVALAGLLP GLRSHGLQLS PTDSTTPDSQ PSRERSIGDV  60
   61 TTAPPEVTPE SRPVNRSVTE HGMKPRKAFP VLGIDYTHVR TPFEISLWIL LACLMKIGFH 120
  121 VIPTISSIVP ESCLLIVVGL LVGGLIKGVG EKPPFLQSEV FFLFLLPPII LDAGYFLPLR 180
  181 QFTENLGTIL IFAVVGTLWN AFFLGGLMYA VCLVGGEQIN NIGLLDNLLF GSIISAVDPV 240
  241 AVLAVFEEIH INELLHILVF GESLLNDAVT VVLYHLFEEF ANYDHVGIVD IVLGFLSFFV 300
  301 VALGGVFVGV VYGVIAAFTS RFTAHIRVIE PLFVFLYSYM AYLSAELFHL SGIMALIASG 360
  361 VVMRPYVEAN ISHKSHTTIK YFLKMWSSVS ETLIFIFLGV STVAGSHHWN WTFVISTLLF 420
  421 CLIARVLGVL GLTWFINKFR IVKLTPKDQF IIAYGGLRGA IAFSLGYLLD KKHFPMCDLF 480
  481 LTAIITVIFF TVFVQGMTIR PLVDLLAVKK KQETKRSINE EIHTQFLDHL LTGIEDICGH 540
  541 YGHHHWKDKL NRFNKKYVKK CLIAGERSKE PQLIAFYHKM EMKQAIELVE SGGMGKIPSA 600
  601 VSTVSMQNIH PKALPAERIL PALSKDKEEE IRKILRNNLQ KTRQRLRSYN RHTLVADPYE 660
  661 EAWNQMLLRR QKARQLEQKI NNYLTVPAHK LDSPTMSRAR IGSDPLAYEP KADLPVITID 720
  721 PASPQSPESV DLVNEELKGK VLGLSREPRV AEEAAEEDED GGIVMRPKEP SSPGTDDVFS 780
  781 PAPSDSPSSQ RMQRCLSDPG PHPEPGEGEP FIPKGQ