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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MRP3_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLCGSGEL GSKFWDSNLT VYTNTPDLTP CFQNSLLAWV PCIYLWAALP CYLFYLRHHR  60
   61 LGYIVLSCLS RLKTALGVLL WCISWVDLFY SFHGLVHGSS PAPVFFITPL LVGITMLLAT 120
  121 LLIQYERLRG VRSSGVLIIF WLLCVICAII PFRSKILLAL AEGKILDPFR FTTFYIYFAL 180
  181 VLCAFILSCF QEKPPLFSPE NLDTNPCPEA SAGFFSRLSF WWFTKLAILG YRRPLEDSDL 240
  241 WSLSEEDCSH KVVQRLLEAW QKQQTQASGP QTAALEPKIA GEDEVLLKAR PKTKKPSFLR 300
  301 ALVRTFTSSL LMGACFKLIQ DLSPSSTHSC SASSSGLFRP HGPYWWGFLL AGLMFVSSTM 360
  361 QTLILHQHYH CIFVMALRIR TAIIGVIYRK ALTITNSVKR EYTVGEMVNL MSVDAQRFMD 420
  421 VSPFINLLWS APLQVILAIY FLWQILGPSA LAGVAVIVLL IPLNGAVSMK MKTYQVQQMK 480
  481 FKDSRIKLMS EILNGIKVLK LYAWEPTFLE QVEGIRQGEL QLLRKGAYLQ AISTFIWVCT 540
  541 PFMVTLITLG VYVCVDKNNV LDAEKAFVSL SLFNILKIPL NLLPQLISGM TQTSVSLKRI 600
  601 QDFLNQDELD PQCVERKTIS PGRAITIHNG TFSWSKDLPP TLHSINIQIP KGALVAVVGP 660
  661 VGCGKSSLVS ALLGEMEKLE GAVSVKGSVA YVPQQAWIQN CTLQENVLFG QPMNPKRYQQ 720
  721 ALETCALLAD LDVLPGGDQT EIGEKGINLS GGQRQRVSLA RAVYSDANIF LLDDPLSAVD 780
  781 SHVAKHIFDQ VIGPEGVLAG KTRVLVTHGI SFLPQTDFII VLADGQITEM GHYSELLQHD 840
  841 GSFANFLRNY APDENQEANE GVLQHANEEV LLLEDTLSTH TDLTDTEPAI YEVRKQFMRE 900
  901 MSSLSSEGEG QNRPVLKRYT SSLEKEVPAT QTKETGALIK EEIAETGNVK LSVYWDYAKS 960
  961 VGLCTTLFIC LLYAGQNAVA IGANVWLSAW TNDVEEHGQQ NNTSVRLGVY ATLGILQGLL1020
 1021 VMLSAFTMVV GAIQAARLLH TALLHNQIRA PQSFFDTTPS GRILNRFSKD IYVIHEVLAP1080
 1081 TILMLFNSFY TSISTIVVIV ASTPLFCVVV LPLAVFYGFV QRFYVATSRQ LKRLESVSRS1140
 1141 PIFSHFSETV TGTSVIRAYG RVQDFKVLSD AKVDSNQKTT YPYIASNRWL GVHVEFVGNC1200
 1201 VVLFSALFAV IGRNSLNPGL VGLSVSYALQ VTLSLNWMIR TLSDLESNII AVERVKEYSK1260
 1261 TETEAPWVLE SNRAPEGWPR SGVVEFRNYS VRYRPGLELV LKNLTLHVQG GEKVGIVGRT1320
 1321 GAGKSSMTLC LFRILEAAEG EIFIDGLNVA HIGLHDLRSQ LTIIPQDPIL FSGTLRMNLD1380
 1381 PFGRYSDEDI WRTLELSHLS AFVSSQPTGL DFQCSEGGDN LSVGQRQLVC LARALLRKSR1440
 1441 VLVLDEATAA IDLETDDLIQ GTIRTQFEDC TVLTIAHRLN TIMDYNRVLV LDKGVVAEFD1500
 1501 SPVNLIAAGG IFYGMAKDAG LA

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