YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MENA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	37	0.96
Non-Cytoplasmic	38	43	0.76
Transmembrane Helix	44	63	0.93
Cytoplasmic	64	97	0.94
Transmembrane Helix	98	118	0.93
Non-Cytoplasmic	119	123	0.77
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	150	0.81
Transmembrane Helix	151	172	0.89
Non-Cytoplasmic	173	177	0.74
Transmembrane Helix	178	199	0.90
Cytoplasmic	200	227	0.89
Transmembrane Helix	228	246	0.93
Non-Cytoplasmic	247	250	0.71
Transmembrane Helix	251	269	0.83
Cytoplasmic	270	285	0.84
Transmembrane Helix	286	307	0.87
Non-Cytoplasmic	308	308	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQQISRTQ AWLESLRPKT LPLAFAAIIV GTALAWWQGH FDPLVALLAL ITAGLLQILS  60
   61 NLANDYGDAV KGSDKPDRIG PLRGMQKGVI TQQEMKRALI ITVVLICLSG LALVAVACHT 120
  121 LADFVGFLIL GGLSIIAAIT YTVGNRPYGY IGLGDISVLV FFGWLSVMGS WYLQAHTLIP 180
  181 ALILPATACG LLATAVLNIN NLRDINSDRE NGKNTLVVRL GEVNARRYHA CLLMGSLVCL 240
  241 ALFNLFSLHS LWGWLFLLAA PLLVKQARYV MREMDPVAMR PMLERTVKGA LLTNLLFVLG 300
  301 IFLSQWAA