YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDLA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFAQLSWY FRREWRRYLG AVALLVIIAM LQLVPPKVVG IVVDGVTEQH FTTGQILMWI  60
   61 ATMVLIAVVV YLLRYVWRVL LFGASYQLAV ELREDYYRQL SRQHPEFYLR HRTGDLMARA 120
  121 TNDVDRVVFA AGEGVLTLVD SLVMGCAVLI MMSTQISWQL TLFSLLPMPV MAIMIKRNGD 180
  181 ALHERFKLAQ AAFSSLNDRT QESLTSIRMI KAFGLEDRQS ALFAADAEDT GKKNMRVARI 240
  241 DARFDPTIYI AIGMANLLAI GGGSWMVVQG SLTLGQLTSF MMYLGLMIWP MLALAWMFNI 300
  301 VERGSAAYSR IRAMLAEAPV VNDGSEPVPE GRGELDVNIH QFTYPQTDHP ALENVNFALK 360
  361 PGQMLGICGP TGSGKSTLLS LIQRHFDVSE GDIRFHDIPL TKLQLDSWRS RLAVVSQTPF 420
  421 LFSDTVANNI ALGCPNATQQ EIEHVARLAS VHDDILRLPQ GYDTEVGERG VMLSGGQKQR 480
  481 ISIARALLVN AEILILDDAL SAVDGRTEHQ ILHNLRQWGQ GRTVIISAHR LSALTEASEI 540
  541 IVMQHGHIAQ RGNHDVLAQQ SGWYRDMYRY QQLEAALDDA PENREEAVDA

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	36	0.93
Non-Cytoplasmic	37	55	0.83
Transmembrane Helix	56	75	0.95
Cytoplasmic	76	126	0.97
Transmembrane Helix	127	151	0.85
Non-Cytoplasmic	152	155	0.78
Transmembrane Helix	156	175	0.88
Cytoplasmic	176	245	0.95
Transmembrane Helix	246	268	0.89
Non-Cytoplasmic	269	279	0.81
Transmembrane Helix	280	300	0.92
Cytoplasmic	301	590	0.95