YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDFA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	32	0.86
Non-Cytoplasmic	33	52	0.88
Transmembrane Helix	53	73	0.91
Cytoplasmic	74	82	0.88
Transmembrane Helix	83	102	0.95
Non-Cytoplasmic	103	110	0.74
Transmembrane Helix	111	130	0.96
Cytoplasmic	131	141	0.78
Transmembrane Helix	142	165	0.84
Non-Cytoplasmic	166	171	0.61
Transmembrane Helix	172	189	0.94
Cytoplasmic	190	219	0.91
Transmembrane Helix	220	240	0.92
Non-Cytoplasmic	241	256	0.85
Transmembrane Helix	257	276	0.94
Cytoplasmic	277	286	0.80
Transmembrane Helix	287	308	0.90
Non-Cytoplasmic	309	318	0.59
Transmembrane Helix	319	340	0.87
Cytoplasmic	341	346	0.92
Transmembrane Helix	347	368	0.87
Non-Cytoplasmic	369	378	0.75
Transmembrane Helix	379	399	0.93
Cytoplasmic	400	410	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNKLASGAR LGRQALLFPL CLVLYEFSTY IGNDMIQPGM LAVVEQYQAG IDWVPTSMTA  60
   61 YLAGGMFLQW LLGPLSDRIG RRPVMLAGVV WFIVTCLAIL LAQNIEQFTL LRFLQGISLC 120
  121 FIGAVGYAAI QESFEEAVCI KITALMANVA LIAPLLGPLV GAAWIHVLPW EGMFVLFAAL 180
  181 AAISFFGLQR AMPETATRIG EKLSLKELGR DYKLVLKNGR FVAGALALGF VSLPLLAWIA 240
  241 QSPIIIITGE QLSSYEYGLL QVPIFGALIA GNLLLARLTS RRTVRSLIIM GGWPIMIGLL 300
  301 VAAAATVISS HAYLWMTAGL SIYAFGIGLA NAGLVRLTLF ASDMSKGTVS AAMGMLQMLI 360
  361 FTVGIEISKH AWLNGGNGLF NLFNLVNGIL WLSLMVIFLK DKQMGNSHEG