YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCHR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVGAGKEGV GRAVGLRGSR GCQAVEEDPF LDCGAQAPGQ GGGGRWRLPQ PAWVDGRALH  60
   61 SREQATCTGC MDLQASLLST GPNASNISDG QDNFTLAGPP PRTRSVSYIN IIMPSVFGTI 120
  121 CLLGIVGNST VIFAVVKKSK LHWCSNVPDI FIINLSVVDL LFLLGMPFMI HQLMGNGVWH 180
  181 FGETMCTLIT AMDANSQFTS TYILTAMAID RYLATVHPIS STKFRKPSMA TLVICLLWAL 240
  241 SFISITPVWL YARLIPFPGG AVGCGIRLPN PDTDLYWFTL YQFFLAFALP FVVITAAYVK 300
  301 ILQRMTSSVA PASQRSIRLR TKRVTRTAIA ICLVFFVCWA PYYVLQLTQL SISRPTLTFV 360
  361 YLYNAAISLG YANSCLNPFV YIVLCETFRK RLVLSVKPAA QGQLRTVSNA QTADEERTES 420
  421 KGT

Type	Start	End	Confidence
Non-Cytoplasmic	1	110	0.68
Transmembrane Helix	111	136	0.83
Cytoplasmic	137	149	0.66
Transmembrane Helix	150	171	0.90
Non-Cytoplasmic	172	193	0.58
Transmembrane Helix	194	214	0.56
Cytoplasmic	215	229	0.86
Transmembrane Helix	230	251	0.93
Non-Cytoplasmic	252	279	0.93
Transmembrane Helix	280	302	0.91
Cytoplasmic	303	322	0.98
Transmembrane Helix	323	345	0.92
Non-Cytoplasmic	346	361	0.92
Transmembrane Helix	362	385	0.72
Cytoplasmic	386	423	0.81