YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LNT_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTNIRAFAQ QKSRLSALRL VLAFILGAST ALSFAPYSLW IIYPIAMSLA LWQSESLNPK  60
   61 ASFFHWLSFG FGCFAVGISW VHVSMDTFGG LPLPASVALM ALLALYLALY PALTGLGLAW 120
  121 FTRTNSHSLW RNLLLFPALW TLTEWARGWV LTGFPWIWAG YSQTEGPLKA LASIIGALGL 180
  181 SFIIAMIAGA LALCFSKRYK SLLILLPITA VAAWVAPKLS QIQPTGESVK VALVQGNIPQ 240
  241 SMKWEPEALW PTLLKYMDLS REHFDADIIV WPEAAIPAPE SMVQDFLDNA NKVANLNHTS 300
  301 IITGIISRQQ EDFYNSLIVL GNHNQKQQDN PDYESDGSNQ FKKHHLLPIG EFVPFQALLR 360
  361 PIAPFFNLPM SSFARGDYLQ PNLSALGHKV APAICYEIAF PEQLRDSVNL GTDLLLTVSN 420
  421 DAWFGTSNGP LQHMEIAQMR AIELGRPLVR ATNNGVTAVV DENGNITAAL PQFETGVLSA 480
  481 TIPLVTGQTW FAKIGQTPLL ILCGALLLVG FIRRQKQQ

Type	Start	End	Confidence
Cytoplasmic	1	14	0.76
Transmembrane Helix	15	35	0.83
Non-Cytoplasmic	36	38	0.51
Transmembrane Helix	39	54	0.73
Cytoplasmic	55	62	0.73
Transmembrane Helix	63	83	0.94
Non-Cytoplasmic	84	96	0.72
Transmembrane Helix	97	121	0.83
Cytoplasmic	122	131	0.71
Transmembrane Helix	132	151	0.81
Non-Cytoplasmic	152	169	0.78
Transmembrane Helix	170	193	0.91
Cytoplasmic	194	200	0.73
Transmembrane Helix	201	217	0.86
Non-Cytoplasmic	218	489	0.93
Transmembrane Helix	490	512	0.80
Cytoplasmic	513	518	0.81