YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LNT_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGFNAVPRR DYVMAALSGV LLALSFPKPG FSILAWVALV PLLLACGRKA PAVAFRLGFT  60
   61 AGLVAYAGIL YWINIAVVTY GRLHWSVSIV IFLMLAGYLA LYPAATAYVV RRGEDRGISA 120
  121 LLAFPVVWVG LEYIRSFLLT GFPWASLGYS QYRTLPLIQI ADLTGVYGLS FLIALSNVVL 180
  181 YRIIRGFAAR ERAPYPVKSA AILVLLLVAT LAYGFNRLHR PEAGAPFSVA LIQGNIDQSV 240
  241 KWDPAFQEAT VAVYERLSRK ACSTGPADLV VWPESAVPFY LQNEEKYASR IRNLTRELRS 300
  301 CTVVGSPAFE RDGETIRYLN SAFLLSPWGD VVGRSDKIHL VPFGEYVPMA KFLPFVNKIV 360
  361 AGIGDFSPGA RIASLETGKG AIGVLVCFEG IFPELARGYV RAGSRVLVNI TNDAWYKRSS 420
  421 APYQHLSMTV FRAVENRVPL VRAANTGITA IIDSKGHILR MTNLFEVWRP RFSWTRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	45	0.80
Cytoplasmic	46	52	0.79
Transmembrane Helix	53	75	0.88
Non-Cytoplasmic	76	82	0.79
Transmembrane Helix	83	106	0.84
Cytoplasmic	107	117	0.80
Transmembrane Helix	118	139	0.88
Non-Cytoplasmic	140	162	0.81
Transmembrane Helix	163	184	0.87
Cytoplasmic	185	194	0.93
Transmembrane Helix	195	215	0.91
Non-Cytoplasmic	216	477	0.98