YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_VIBVU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGYLPFPN IDPVFFSIGP ISVRWYGLMY LFGFLFAMWL ANRRADKPGS GWTREQVSDL  60
   61 LFAGFLGVVL GGRIGYVLFY NFDLFLADPI YLFKVWTGGM SFHGGLLGVI TAMLWYAKKN 120
  121 GRTFFGVADF VAPLVPFGLG VGRLGNFMNG ELWGRVTDVP WAMVFPTGGP LPRHPSQLYE 180
  181 MALEGVVLFF ILNWFIRKPR PLGSVSGLFL AGYGTFRFLV EYVREPDAQL GLFGGFISMG 240
  241 QILSSPMIIG GLALMAWAYK RGHYQDKVTV K

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.94
Cytoplasmic	42	59	0.90
Transmembrane Helix	60	80	0.92
Non-Cytoplasmic	81	94	0.89
Transmembrane Helix	95	116	0.90
Cytoplasmic	117	123	0.85
Transmembrane Helix	124	144	0.92
Non-Cytoplasmic	145	175	0.92
Transmembrane Helix	176	196	0.89
Cytoplasmic	197	201	0.89
Transmembrane Helix	202	220	0.91
Non-Cytoplasmic	221	236	0.75
Transmembrane Helix	237	258	0.89
Cytoplasmic	259	271	0.92