YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDGT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.96
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	41	0.71
Transmembrane Helix	42	62	0.85
Cytoplasmic	63	76	0.77
Transmembrane Helix	77	96	0.95
Non-Cytoplasmic	97	103	0.84
Transmembrane Helix	104	126	0.89
Cytoplasmic	127	139	0.86
Transmembrane Helix	140	163	0.88
Non-Cytoplasmic	164	168	0.76
Transmembrane Helix	169	187	0.93
Cytoplasmic	188	197	0.75
Transmembrane Helix	198	216	0.88
Non-Cytoplasmic	217	223	0.61
Transmembrane Helix	224	244	0.93
Cytoplasmic	245	252	0.84
Transmembrane Helix	253	274	0.90
Non-Cytoplasmic	275	285	0.80
Transmembrane Helix	286	309	0.90
Cytoplasmic	310	327	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIKRSIEKI PGGMMLVPLF LGALCHTFSP GAGKYFGSFT NGMITGTVPI LAVWFFCMGA  60
   61 SIKLSATGTV LRKSGTLVVT KIAVAWVVAA IASRIIPEHG VEVGFFAGLS TLALVAAMDM 120
  121 TNGGLYASIM QQYGTKEEAG AFVLMSLESG PLMTMIILGT AGIASFEPHV FVGAVLPFLV 180
  181 GFALGNLDPE LREFFSKAVQ TLIPFFAFAL GNTIDLTVIA QTGLLGILLG VAVIIVTGIP 240
  241 LIIADKLIGG GDGTAGIAAS SSAGAAVATP VLIAEMVPAF KPMAPAATSL VATAVIVTSI 300
  301 LVPILTSIWS RKVKARAAKI EILGTVK