YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYFF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.95
Transmembrane Helix	5	24	0.93
Cytoplasmic	25	34	0.88
Transmembrane Helix	35	56	0.91
Non-Cytoplasmic	57	74	0.84
Transmembrane Helix	75	97	0.90
Cytoplasmic	98	111	0.83
Transmembrane Helix	112	130	0.91
Non-Cytoplasmic	131	135	0.77
Transmembrane Helix	136	157	0.89
Cytoplasmic	158	167	0.78
Transmembrane Helix	168	191	0.89
Non-Cytoplasmic	192	215	0.83
Transmembrane Helix	216	236	0.89
Cytoplasmic	237	252	0.83
Transmembrane Helix	253	275	0.91
Non-Cytoplasmic	276	287	0.77
Transmembrane Helix	288	306	0.97
Cytoplasmic	307	321	0.78
Transmembrane Helix	322	342	0.89
Non-Cytoplasmic	343	348	0.61
Transmembrane Helix	349	367	0.73
Cytoplasmic	368	378	0.68
Transmembrane Helix	379	398	0.90
Non-Cytoplasmic	399	417	0.72
Transmembrane Helix	418	437	0.96
Cytoplasmic	438	456	0.76
Transmembrane Helix	457	477	0.93
Non-Cytoplasmic	478	483	0.64
Transmembrane Helix	484	502	0.46
Cytoplasmic	503	526	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSVMFALL LLTPLLFSLL CFACRKRRLS ATRTVTVLHS LGITLLLILA LWVVQTAADA  60
   61 GEIFAAGLWL HIDGLGGLFL AILGVIGFLT GIYSIGYMRH EVAHGELSPV TLCDYYGFFH 120
  121 LFLFTMLLVV TSNNLIVMWA AIEATTLSSA FLVGIYGQRS SLEAAWKYII ICTVGVAFGL 180
  181 FGTVLVYANA ASVMPQAEMA IFWSEVLKQS SLLDPTLMLL AFVFLLIGFG TKTGLFPMHA 240
  241 WLPDAHSEAP SPVSALLSAV LLNCALLVLI RYYIIICQAI GSDFPNRLLL IFGMLSVAVA 300
  301 AFFILVQRDI KRLLAYSSVE NMGLVAVELG IGGPLGIFAA LLHILNHSLA KTLLFCGSGN 360
  361 VLLKYGTRDL NVVCGMLKIM PFTAVLFGGG ALALAGMPPF NIFLSEFMTI TAGLARNHLL 420
  421 IIVLLLLLLT LVLAGLVRMA ARVLMAKPPQ AVNRGDLGWL TTSPMVILLV MMLAMGTHIP 480
  481 QPVIRILAGA STIVLSGTHD LPAQRSTWHD FLPSGTASVS EKHSER