YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYFC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQTLCDGYL VIFALAQAVI LLMLTPLFTG ISRQIRARMH SRRGPGIWQD YRDIHKLFKR  60
   61 QEVAPTSSGL MFRLMPWVLI SSMLVLAMAL PLFITVSPFA GGGDLITLIY LLALFRFFFA 120
  121 LSGLDTGSPF AGVGASRELT LGILVEPMLI LSLLVLALIA GSTHIEMISN TLAMGWNSPL 180
  181 TTVLALLACG FACFIEMGKI PFDVAEAEQE LQEGPLTEYS GAGLALAKWG LGLKQVVMAS 240
  241 LFVALFLPFG RAQELSLACL LTSLVVTLLK VLLIFVLASI AENTLARGRF LLIHHVTWLG 300
  301 FSLAALAWVF WLTGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.91
Transmembrane Helix	9	32	0.89
Cytoplasmic	33	73	0.91
Transmembrane Helix	74	95	0.89
Non-Cytoplasmic	96	105	0.61
Transmembrane Helix	106	127	0.81
Cytoplasmic	128	140	0.76
Transmembrane Helix	141	162	0.90
Non-Cytoplasmic	163	174	0.73
Transmembrane Helix	175	195	0.89
Cytoplasmic	196	230	0.86
Transmembrane Helix	231	250	0.91
Non-Cytoplasmic	251	256	0.75
Transmembrane Helix	257	280	0.90
Cytoplasmic	281	290	0.83
Transmembrane Helix	291	312	0.94
Non-Cytoplasmic	313	315	0.82