YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYFB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	35	0.82
Transmembrane Helix	36	58	0.89
Non-Cytoplasmic	59	79	0.89
Transmembrane Helix	80	101	0.94
Cytoplasmic	102	109	0.86
Transmembrane Helix	110	129	0.94
Non-Cytoplasmic	130	133	0.81
Transmembrane Helix	134	153	0.93
Cytoplasmic	154	163	0.86
Transmembrane Helix	164	185	0.94
Non-Cytoplasmic	186	201	0.85
Transmembrane Helix	202	223	0.86
Cytoplasmic	224	240	0.83
Transmembrane Helix	241	262	0.87
Non-Cytoplasmic	263	272	0.83
Transmembrane Helix	273	295	0.94
Cytoplasmic	296	305	0.85
Transmembrane Helix	306	328	0.86
Non-Cytoplasmic	329	344	0.78
Transmembrane Helix	345	366	0.85
Cytoplasmic	367	382	0.86
Transmembrane Helix	383	405	0.88
Non-Cytoplasmic	406	430	0.84
Transmembrane Helix	431	453	0.88
Cytoplasmic	454	472	0.89
Transmembrane Helix	473	496	0.90
Non-Cytoplasmic	497	529	0.92
Transmembrane Helix	530	552	0.92
Cytoplasmic	553	651	0.99
Transmembrane Helix	652	671	0.92
Non-Cytoplasmic	672	672	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALQLLTWS LILYLFASLA SLFLLGLDRL AIKLSGITSL VGGVIGIISG ITQLHAGVTL  60
   61 VARFAPPFEF ADLTLRMDSL SAFMVLVISL LVVVCSLYSL TYMREYEGKG AAAMGFFMNI 120
  121 FIASMVALLV MDNAFWFIVL FEMMSLSSWF LVIARQDKTS INAGMLYFFI AHAGSVLIMI 180
  181 AFLLMGRESG SLDFASFRTL SLSPGLASAV FLLAFFGFGA KAGMMPLHSW LPRAHPAAPS 240
  241 HASALMSGVM VKIGIFGILK VAMDLLAQTG LPLWWGILVM AIGAISALLG VLYALAEQDI 300
  301 KRLLAWSTVE NVGIILLAVG VAMVGLSLHD PLLTVVGLLG ALFHLLNHAL FKGLLFLGAG 360
  361 AIISRLHTHD MEKMGALAKR MPWTAAACLI GCLAISAIPP LNGFISEWYT WQSLFSLSRV 420
  421 EAVALQLAGP IAMVMLAVTG GLAVMCFVKM YGITFCGAPR STHAEEAQEV PNTMIVAMLL 480
  481 LAALCVLIAL SASWLAPKIM HIAHAFTNTP PATVASGIAL VPGTFHTQVT PSLLLLLLLA 540
  541 MPLLPGLYWL WCRSRRAAFR RTGDAWACGY GWENAMAPSG NGVMQPLRVV FSALFRLRQQ 600
  601 LDPTLRLNKG LAHVTARAQS TEPFWDERVI RPIVSATQRL AKEIQHLQSG DFRLYCLYVV 660
  661 AALVVLLIAI AV