YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYCD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLYPLIQA LVLFAVAPLL SGITRVARAR LHNRRGPGVL QEYRDIIKLL GRQSVGPDAS  60
   61 GWVFRLTPYV MVGVMLTIAT ALPVVTVGSP LPQLGDLITL LYLFAIARFF FAISGLDTGS 120
  121 PFTAIGASRE AMLGVLVEPM LLLGLWVAAQ VAGSTNISNI TDTVYHWPLS QSIPLVLALC 180
  181 ACAFATFIEM GKLPFDLAEA EQELQEGPLS EYSGSGFGVM KWGISLKQLV VLQMFVGVFI 240
  241 PWGQMETFTA GGLLLALVIA IVKLVVGVLV IALFENSMAR LRLDITPRIT WAGFGFAFLA 300
  301 FVSLLAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	65	0.93
Transmembrane Helix	66	87	0.87
Non-Cytoplasmic	88	97	0.72
Transmembrane Helix	98	119	0.82
Cytoplasmic	120	131	0.79
Transmembrane Helix	132	152	0.90
Non-Cytoplasmic	153	168	0.82
Transmembrane Helix	169	188	0.92
Cytoplasmic	189	223	0.93
Transmembrane Helix	224	243	0.89
Non-Cytoplasmic	244	251	0.74
Transmembrane Helix	252	274	0.93
Cytoplasmic	275	284	0.93
Transmembrane Helix	285	306	0.88
Non-Cytoplasmic	307	307	0.99