YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.76
Transmembrane Helix	21	40	0.68
Non-Cytoplasmic	41	59	0.81
Transmembrane Helix	60	82	0.87
Cytoplasmic	83	89	0.80
Transmembrane Helix	90	113	0.88
Non-Cytoplasmic	114	132	0.94
Transmembrane Helix	133	155	0.88
Cytoplasmic	156	175	0.90
Transmembrane Helix	176	196	0.93
Non-Cytoplasmic	197	203	0.74
Transmembrane Helix	204	229	0.83
Cytoplasmic	230	325	0.98
Transmembrane Helix	326	347	0.87
Non-Cytoplasmic	348	363	0.83
Transmembrane Helix	364	384	0.90
Cytoplasmic	385	401	0.85
Transmembrane Helix	402	423	0.92
Non-Cytoplasmic	424	438	0.90
Transmembrane Helix	439	461	0.90
Cytoplasmic	462	478	0.79
Transmembrane Helix	479	499	0.85
Non-Cytoplasmic	500	521	0.87
Transmembrane Helix	522	541	0.95
Cytoplasmic	542	576	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVVENRKIL PEKKLGGWRA ITFILGNETL EKLGSIGVSA NFMLYLRNVF HMEPVEAFNV  60
   61 YYLWMGLTNF APLLGALISD AYIGRFKTIA YASLFSILGL MTVTLTACLP QLHPPPCNNP 120
  121 HPDECDDPNK LQLGILFLGL GFLSIGSGGI RPCSIPFGVD QFDQRTEQGL KGVASFFNWY 180
  181 YLTLTMVLIF SHTVVVYLQT VSWVIGFSIP TSLMACAVVL FFVGMRFYVY VKPEGSVFSG 240
  241 IARVIVAARK KRDLKISLVD DGTEEYYEPP VKPGVLSKLP LTDQFKFLDK AAVILDGDLT 300
  301 SEGVPANKWR LCSIQEVEEV KCLIRVVPVW SAGIISIVAM TTQATFMVFQ ATKMDRHMGP 360
  361 HFEIPAASIT VISYITIGIW VPIYEHLLVP FLWRMRKFRV TLLQRMGIGI VFAILSMFTA 420
  421 GFVEGVRRTR ATEMTQMSVF WLALPLILMG LCESFNFIGL IEFFNSQFPE HMRSIANSLF 480
  481 PLSFAAANYL SSLLVTTVHK VSGTKDHPDW LNKDLDRGKL DYFYYLIAVL GVVNLVYFWY 540
  541 CAHRYQYKAG SQIEDFNEEK SLLDIEPNQR HDQSPS