YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GUDP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.95
Transmembrane Helix	17	34	0.93
Non-Cytoplasmic	35	54	0.83
Transmembrane Helix	55	79	0.82
Cytoplasmic	80	86	0.89
Transmembrane Helix	87	105	0.91
Non-Cytoplasmic	106	110	0.62
Transmembrane Helix	111	132	0.83
Cytoplasmic	133	151	0.77
Transmembrane Helix	152	172	0.87
Non-Cytoplasmic	173	178	0.79
Transmembrane Helix	179	201	0.88
Cytoplasmic	202	253	0.97
Transmembrane Helix	254	275	0.87
Non-Cytoplasmic	276	289	0.81
Transmembrane Helix	290	312	0.90
Cytoplasmic	313	327	0.76
Transmembrane Helix	328	346	0.91
Non-Cytoplasmic	347	351	0.75
Transmembrane Helix	352	374	0.91
Cytoplasmic	375	385	0.87
Transmembrane Helix	386	408	0.90
Non-Cytoplasmic	409	415	0.83
Transmembrane Helix	416	436	0.94
Cytoplasmic	437	450	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSQAASS VEKRTNARYW IVVMLFIVTS FNYGDRATLS IAGSEMAKDI GLDPVGMGYV  60
   61 FSAFSWAYVI GQIPGGWLLD RFGSKRVYFW SIFIWSMFTL LQGFVDIFSG FGIIVALFTL 120
  121 RFLVGLAEAP SFPGNSRIVA AWFPAQERGT AVSIFNSAQY FATVIFAPIM GWLTHEVGWS 180
  181 HVFFFMGGLG IVISFIWLKV IHEPNQHPGV NKKELEYIAA GGALINMDQQ NTKVKVPFSV 240
  241 KWGQIKQLLG SRMMIGVYIG QYCINALTYF FITWFPVYLV QARGMSILKA GFVASVPAVC 300
  301 GFIGGVLGGI ISDWLMRRTG SLNIARKTPI VMGMLLSMVM VFCNYVNVEW MIIGFMALAF 360
  361 FGKGIGALGW AVMADTAPKE ISGLSGGLFN MFGNISGIVT PIAIGYIVGT TGSFNGALIY 420
  421 VGVHALIAVL SYLVLVGDIK RIELKPVAGQ