YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTRA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLFAKYTS IGVLNTLIHW VVFGVCIYVA HTNQALANFA GFVVAVSFSF FANAKFTFKA  60
   61 STTTMRYMLY VGFMGTLSAT VGWAADRCAL PPMITLVTFS AISLVCGFVY SKFIVFRDAK 120
  121

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	31	0.93
Non-Cytoplasmic	32	35	0.84
Transmembrane Helix	36	57	0.89
Cytoplasmic	58	66	0.83
Transmembrane Helix	67	85	0.96
Non-Cytoplasmic	86	92	0.81
Transmembrane Helix	93	114	0.93
Cytoplasmic	115	120	0.85